仓库
TA 关注的仓库 (116)
src-oepkgs/su2
SU2 is a suite of open-source software tools written in C++ for the numerical solution of partial differential equations (PDE) and performing PDE constrained optimization. The primary applications are computational fluid dynamics and aerodynamic shape optimization, but has been extended to treat more general equations such as electrodynamics and chemically reacting flows.
最近更新: 30天前src-oepkgs/bwa
BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to a few megabases. BWA-MEM and BWA-SW share similar features such as the support of long reads and chimeric alignment, but BWA-MEM, which is the latest, is generally recommended as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads. For all the algorithms, BWA first needs to construct the FM-index for the reference genome (the index command). Alignment algorithms are invoked with different sub-commands: aln/samse/sampe for BWA-backtrack, bwasw for BWA-SW and mem for the BWA-MEM algorithm.
最近更新: 11个月前src-oepkgs/hmmer
HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).
最近更新: 11个月前src-oepkgs/bayesTyper
BayesTyper uses exact alignment of k-mers to a graph representation of the input variants and reference sequence in combination with a probabilistic model of k-mer counts to do genotyping.
最近更新: 11个月前src-oepkgs/opencv
OpenCV (Open Source Computer Vision Library: http://opencv.org) is an open-source library that includes several hundreds of computer vision algorithms.
最近更新: 1年前src-oepkgs/sim4
A similarity-based tool for aligning an expressed DNA sequence with a genomic sequence for the gene
最近更新: 1年多前src-oepkgs/salmon
Highly-accurate repodesc wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
最近更新: 1年多前