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from pickle import FALSE
from torchvision import transforms
from datasets.dataset import *
from utils import *
from datetime import datetime
import ml_collections
class setting_config:
"""
the config of training setting.
"""
network = 'vmunet'
model_config = {
'num_classes': 9,
'input_channels': 3,
# ----- VM-UNet ----- #
'depths': [2,2,2,2],
'depths_decoder': [2,2,2,1],
'drop_path_rate': 0.2,
'load_ckpt_path': './pre_trained_weights/vmamba_small_e238_ema.pth',
}
datasets_name = 'synapse'
input_size_h = 224
input_size_w = 224
if datasets_name == 'synapse':
data_path = './data/Synapse/train_npz/'
datasets = Synapse_dataset
list_dir = './data/Synapse/lists/lists_Synapse/'
volume_path = './data/Synapse/test_vol_h5/'
else:
raise Exception('datasets in not right!')
pretrained_path = '' # if using pretrained, please enter the path of weights
num_classes = 9
loss_weight = [1, 1]
criterion = CeDiceLoss(num_classes, loss_weight)
z_spacing = 1
input_channels = 3
distributed = False
local_rank = -1
num_workers = 0 #16
seed = 42
world_size = None
rank = None
amp = False
batch_size = 32
epochs = 300
work_dir = 'results/' + network + '_' + datasets_name + '_' + datetime.now().strftime('%A_%d_%B_%Y_%Hh_%Mm_%Ss') + '/'
# 'D:/CODES/MedSeg/BIBM22/results/datrm2_isic18_Sunday_04_September_2022_12h_04m_10s/'
print_interval = 20
val_interval = 100
test_weights_path = ''
threshold = 0.5
opt = 'AdamW'
assert opt in ['Adadelta', 'Adagrad', 'Adam', 'AdamW', 'Adamax', 'ASGD', 'RMSprop', 'Rprop', 'SGD'], 'Unsupported optimizer!'
if opt == 'Adadelta':
lr = 0.01 # default: 1.0 – coefficient that scale delta before it is applied to the parameters
rho = 0.9 # default: 0.9 – coefficient used for computing a running average of squared gradients
eps = 1e-6 # default: 1e-6 – term added to the denominator to improve numerical stability
weight_decay = 0.05 # default: 0 – weight decay (L2 penalty)
elif opt == 'Adagrad':
lr = 0.01 # default: 0.01 – learning rate
lr_decay = 0 # default: 0 – learning rate decay
eps = 1e-10 # default: 1e-10 – term added to the denominator to improve numerical stability
weight_decay = 0.05 # default: 0 – weight decay (L2 penalty)
elif opt == 'Adam':
lr = 0.0001 # default: 1e-3 – learning rate
betas = (0.9, 0.999) # default: (0.9, 0.999) – coefficients used for computing running averages of gradient and its square
eps = 1e-8 # default: 1e-8 – term added to the denominator to improve numerical stability
weight_decay = 0.05 # default: 0 – weight decay (L2 penalty)
amsgrad = False # default: False – whether to use the AMSGrad variant of this algorithm from the paper On the Convergence of Adam and Beyond
elif opt == 'AdamW':
lr = 0.001 # default: 1e-3 – learning rate
betas = (0.9, 0.999) # default: (0.9, 0.999) – coefficients used for computing running averages of gradient and its square
eps = 1e-8 # default: 1e-8 – term added to the denominator to improve numerical stability
weight_decay = 1e-2 # default: 1e-2 – weight decay coefficient
amsgrad = False # default: False – whether to use the AMSGrad variant of this algorithm from the paper On the Convergence of Adam and Beyond
elif opt == 'Adamax':
lr = 2e-3 # default: 2e-3 – learning rate
betas = (0.9, 0.999) # default: (0.9, 0.999) – coefficients used for computing running averages of gradient and its square
eps = 1e-8 # default: 1e-8 – term added to the denominator to improve numerical stability
weight_decay = 0 # default: 0 – weight decay (L2 penalty)
elif opt == 'ASGD':
lr = 0.01 # default: 1e-2 – learning rate
lambd = 1e-4 # default: 1e-4 – decay term
alpha = 0.75 # default: 0.75 – power for eta update
t0 = 1e6 # default: 1e6 – point at which to start averaging
weight_decay = 0 # default: 0 – weight decay
elif opt == 'RMSprop':
lr = 1e-2 # default: 1e-2 – learning rate
momentum = 0 # default: 0 – momentum factor
alpha = 0.99 # default: 0.99 – smoothing constant
eps = 1e-8 # default: 1e-8 – term added to the denominator to improve numerical stability
centered = False # default: False – if True, compute the centered RMSProp, the gradient is normalized by an estimation of its variance
weight_decay = 0 # default: 0 – weight decay (L2 penalty)
elif opt == 'Rprop':
lr = 1e-2 # default: 1e-2 – learning rate
etas = (0.5, 1.2) # default: (0.5, 1.2) – pair of (etaminus, etaplis), that are multiplicative increase and decrease factors
step_sizes = (1e-6, 50) # default: (1e-6, 50) – a pair of minimal and maximal allowed step sizes
elif opt == 'SGD':
lr = 0.003 # – learning rate
momentum = 0.9 # default: 0 – momentum factor
weight_decay = 0.0001 # default: 0 – weight decay (L2 penalty)
dampening = 0 # default: 0 – dampening for momentum
nesterov = False # default: False – enables Nesterov momentum
sch = 'CosineAnnealingLR'
if sch == 'StepLR':
step_size = epochs // 5 # – Period of learning rate decay.
gamma = 0.5 # – Multiplicative factor of learning rate decay. Default: 0.1
last_epoch = -1 # – The index of last epoch. Default: -1.
elif sch == 'MultiStepLR':
milestones = [60, 120, 150] # – List of epoch indices. Must be increasing.
gamma = 0.1 # – Multiplicative factor of learning rate decay. Default: 0.1.
last_epoch = -1 # – The index of last epoch. Default: -1.
elif sch == 'ExponentialLR':
gamma = 0.99 # – Multiplicative factor of learning rate decay.
last_epoch = -1 # – The index of last epoch. Default: -1.
elif sch == 'CosineAnnealingLR':
T_max = 100 # – Maximum number of iterations. Cosine function period.
eta_min = 0.00001 # – Minimum learning rate. Default: 0.
last_epoch = -1 # – The index of last epoch. Default: -1.
elif sch == 'ReduceLROnPlateau':
mode = 'min' # – One of min, max. In min mode, lr will be reduced when the quantity monitored has stopped decreasing; in max mode it will be reduced when the quantity monitored has stopped increasing. Default: ‘min’.
factor = 0.1 # – Factor by which the learning rate will be reduced. new_lr = lr * factor. Default: 0.1.
patience = 10 # – Number of epochs with no improvement after which learning rate will be reduced. For example, if patience = 2, then we will ignore the first 2 epochs with no improvement, and will only decrease the LR after the 3rd epoch if the loss still hasn’t improved then. Default: 10.
threshold = 0.0001 # – Threshold for measuring the new optimum, to only focus on significant changes. Default: 1e-4.
threshold_mode = 'rel' # – One of rel, abs. In rel mode, dynamic_threshold = best * ( 1 + threshold ) in ‘max’ mode or best * ( 1 - threshold ) in min mode. In abs mode, dynamic_threshold = best + threshold in max mode or best - threshold in min mode. Default: ‘rel’.
cooldown = 0 # – Number of epochs to wait before resuming normal operation after lr has been reduced. Default: 0.
min_lr = 0 # – A scalar or a list of scalars. A lower bound on the learning rate of all param groups or each group respectively. Default: 0.
eps = 1e-08 # – Minimal decay applied to lr. If the difference between new and old lr is smaller than eps, the update is ignored. Default: 1e-8.
elif sch == 'CosineAnnealingWarmRestarts':
T_0 = 50 # – Number of iterations for the first restart.
T_mult = 2 # – A factor increases T_{i} after a restart. Default: 1.
eta_min = 1e-6 # – Minimum learning rate. Default: 0.
last_epoch = -1 # – The index of last epoch. Default: -1.
elif sch == 'WP_MultiStepLR':
warm_up_epochs = 10
gamma = 0.1
milestones = [125, 225]
elif sch == 'WP_CosineLR':
warm_up_epochs = 20
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