url: https://shixiangwang.github.io/gcap/
template:
  boostrap: 5
  bootswatch: materia

authors:
  Shixiang Wang:
    href: https://orcid.org/0000-0001-9855-7357
reference:
  - title: Workflow
    desc: Pipeline for implementing end-to-end analysis
    contents:
    - gcap.workflow
    - gcap.workflow.seqz
    - gcap.workflow.facets
    - gcap.ASCNworkflow
    - deploy
  - title: Class
    desc: Package builtin class
    contents:
    - fCNA
  - title: Analysis Wrapper
    desc: Core build block for constructing pipeline
    contents:
    - gcap.runASCAT
    - gcap.runBuildflow
    - gcap.runPrediction
    - gcap.runScoring
    - gcap.runASCNBuildflow
  - title: Individual Analysis Modules
    desc: Individual data processing and analysis functions
    contents:
    - gcap.extractFeatures
    - gcap.collapse2Genes
    - get_auc
    - mergeDTs
    - overlaps
  - title: Datasets
    desc: Builtin datasets
    contents:
    - ec
    - ascn
    - oncogenes