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from models import proposed_model
from keras.optimizers import Adam
from keras.utils import np_utils
from callbacks import Step
import numpy as np
import random
import cv2
import os
import matplotlib
matplotlib.use('AGG')
import matplotlib.pyplot as plt
import glob
import math
import os
os.environ["CUDA_VISIBLE_DEVICES"] = "6"
import tensorflow as tf
from keras.backend.tensorflow_backend import set_session
config = tf.ConfigProto()
config.gpu_options.per_process_gpu_memory_fraction = 0.45
set_session(tf.Session(config=config))
def plot_history(history, result_dir):
plt.plot(history.history['acc'], marker='.')
plt.plot(history.history['val_acc'], marker='.')
plt.title('model accuracy')
plt.xlabel('epoch')
plt.ylabel('accuracy')
plt.grid()
plt.legend(['acc', 'val_acc'], loc='lower right')
plt.savefig(os.path.join(result_dir, 'model_accuracy.png'))
plt.close()
plt.plot(history.history['loss'], marker='.')
plt.plot(history.history['val_loss'], marker='.')
plt.title('model loss')
plt.xlabel('epoch')
plt.ylabel('loss')
plt.grid()
plt.legend(['loss', 'val_loss'], loc='upper right')
plt.savefig(os.path.join(result_dir, 'model_loss.png'))
plt.close()
def save_history(history, result_dir):
loss = history.history['loss']
acc = history.history['acc']
val_loss = history.history['val_loss']
val_acc = history.history['val_acc']
nb_epoch = len(acc)
with open(os.path.join(result_dir, 'result.txt'), 'w') as fp:
fp.write('epoch\tloss\tacc\tval_loss\tval_acc\n')
for i in range(nb_epoch):
fp.write('{}\t{}\t{}\t{}\t{}\n'.format(
i, loss[i], acc[i], val_loss[i], val_acc[i]))
fp.close()
def process_batch(lines,img_path,inputH,inputW,train=True):
imagew = 192
imageh = 128
num = len(lines)
batch = np.zeros((num, inputH, inputW, 3), dtype='float32')
labels = np.zeros(num, dtype='int')
for i in range(num):
path = lines[i].split(' ')[0]
label = lines[i].split(' ')[-1]
label = label.strip('\n')
label = int(label)
img = os.path.join(img_path, path)
if train:
crop_x = random.randint(0, np.max([0, imagew-inputW]))
image = cv2.imread(img)
image = cv2.cvtColor(image, cv2.COLOR_BGR2RGB)
image = image[:, crop_x:crop_x + inputW, :]
batch[i] = image
labels[i] = label
else:
image = cv2.imread(img)
image = cv2.cvtColor(image, cv2.COLOR_BGR2RGB)
image = image[:, 32:32+128, :]
batch[i] = image
labels[i] = label
return batch, labels
def generator_train_batch( train_txt, batch_size, num_classes, img_path, inputH, inputW ):
ff = open(train_txt, 'r')
lines = ff.readlines()
num = len(lines)
while True:
new_line = []
index = [n for n in range(num)]
random.shuffle(index)
for m in range(num):
new_line.append(lines[index[m]])
for i in range(int(num/batch_size)):
a = i*batch_size
b = (i+1)*batch_size
x_train, x_labels = process_batch(new_line[a:b], img_path, inputH, inputW, train=True)
y = np_utils.to_categorical(np.array(x_labels), num_classes)
yield x_train, y
def generator_val_batch(val_txt,batch_size,num_classes,img_path,inputH,inputW):
f = open(val_txt, 'r')
lines = f.readlines()
num = len(lines)
while True:
new_line = []
index = [n for n in range(num)]
random.shuffle(index)
for m in range(num):
new_line.append(lines[index[m]])
for i in range(int(num / batch_size)):
a = i * batch_size
b = (i + 1) * batch_size
y_test,y_labels = process_batch(new_line[a:b],img_path,inputH,inputW,train=False)
y = np_utils.to_categorical(np.array(y_labels), num_classes)
yield y_test, y
def main():
outputdir = 'result/special_v3/'
if os.path.isdir(outputdir):
print('save in :' + outputdir)
else:
os.makedirs(outputdir)
train_img_path = '/data/MIT-BIH_AD_v3/'
test_img_path = '/data/MIT-BIH_AD_v3/'
train_file = './MIT-BIH_AD_sp_train.txt'
test_file = './MIT-BIH_AD_sp_val.txt'
num_classes = 7
f1 = open(train_file, 'r')
f2 = open(test_file, 'r')
lines = f1.readlines()
f1.close()
train_samples = len(lines)
lines = f2.readlines()
f2.close()
val_samples = len(lines)
batch_size = 32
epochs = 120
input_h = 128
input_w = 128
model = proposed_model(nb_classes=num_classes)
lr = 0.0001
adam = Adam(lr=lr)
model.compile(loss='categorical_crossentropy', optimizer=adam, metrics=['accuracy'])
model.summary()
history = model.fit_generator(
generator_train_batch(train_file, batch_size, num_classes, train_img_path, input_h, input_w),
steps_per_epoch=train_samples // batch_size,
epochs=epochs,
callbacks=[Step()],
validation_data=generator_val_batch(test_file, batch_size, num_classes, test_img_path, input_h, input_w),
validation_steps=val_samples // batch_size,
verbose=1)
plot_history(history, outputdir)
save_history(history, outputdir)
model.save_weights(outputdir+'proposed_model')
if __name__ == '__main__':
main()
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